Hey guys, I have few tree files in newnick format and i "cat" them into one big tree file . I want to constuct a consense tree using the bootstrap support not majority rule. I mean analyzing each tree alone i find correct relation in a clade that has like 100 bootsrap support or 95 % + but then they get lost when i use iqtree consense or phylip consense because the majority of the other tree has the wrong relation for this specific clade for example, so the question is How can i do consense based on support not majority ?
I hope i am clear enough. I am sorry I am not very familiar with phylogeny
Thank you so much