Question: Apollo installtion for maker
0
gravatar for ashaneev07
15 months ago by
ashaneev0720
ashaneev0720 wrote:

Hiii.. As i'm installing maker genome annotation pipeline, when it comes with building dependencies it shows the following errors while the installation of Apollo. have you any idea? thank you...

./Build apollo
Downloading apollo...
--2019-08-02 16:28:57--  http://weatherby.genetics.utah.edu/apollo/apollo.tar.gz
Resolving weatherby.genetics.utah.edu weatherby.genetics.utah.edu)... 155.101.145.57
Connecting to weatherby.genetics.utah.edu weatherby.genetics.utah.edu)|155.101.145.57|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 35043986 (33M) [application/x-gzip]
Saving to: ‘/home/dcb/Documents/EV/Maker/maker/src/../exe/apollo.tar.gz’

100%[======================================================================================================>] 3,50,43,986  850KB/s   in 45s    

2019-08-02 16:29:43 (768 KB/s) - ‘/home/dcb/Documents/EV/Maker/maker/src/../exe/apollo.tar.gz’ saved [35043986/35043986]

Unpacking apollo tarball...
Configuring apollo...
Use of uninitialized value $dir in concatenation (.) or string at /home/dcb/Documents/EV/Maker/maker/src/inc/lib/MAKER/Build.pm line 1364.
Use of uninitialized value $dir in concatenation (.) or string at /home/dcb/Documents/EV/Maker/maker/src/inc/lib/MAKER/Build.pm line 1365.
Use of uninitialized value $dir in concatenation (.) or string at /home/dcb/Documents/EV/Maker/maker/src/inc/lib/MAKER/Build.pm line 1366.
Unable to locate tools.jar. Expected to find it in /usr/lib/jvm/java-7-openjdk-amd64/lib/tools.jar
Buildfile: build.xml does not exist!
Build failed


ERROR: Failed installing apollo, now cleaning installation path...
You may need to install apollo manually.
ADD COMMENTlink written 15 months ago by ashaneev0720

Unable to locate tools.jar. Expected to find it in /usr/lib/jvm/java-7-openjdk-amd64/lib/tools.jar

Maybe: https://stackoverflow.com/questions/6676107/unable-to-locate-tools-jar

ADD REPLYlink written 15 months ago by ATpoint41k
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