Hello, I have been trying to visualize KEGG pathways for a group of metabolites (in Tomato). I am getting mappings to 34 different pathways, many of which have common metabolites. My supervisor wants me to combine the individual pathways in a global map so that we can color code the nodes and see the flow of information. I could not find any resource which does that. I used Cytoscape to import the KGML files from KEGG and tried to merge the pathway-networks, but the layouts are getting completely altered which is making it difficult to visualize the pathways. ANy help on this or any other resource is greatly appreciated.
Question: KEGG pathway visualization AND Cytoscape
14 months ago by
pixie@bioinfo • 1.4k
Université Paris, Saclay
pixie@bioinfo • 1.4k wrote:
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