I generated the image using plotProfile deeptools command and it has no scale on the y-axis although as far as I know it should have one by default, or otherwise this chart is quite meaningless.
I would like the y-axis to have a scale of some sort, like the one illustrated in the example on the plotProfile deeptools page, so that I could compare the two lines displayed by the graph.
So, is there a plotProfile command that would take the scale used by the program to generate the chart and put it on the y-axis? Also, how come that my chart doesn't show the y-axis scale by default, is it because something's wrong with the bedgraph file I converted into bw that I then inputted into the computeMatrix?
The bigwig file used to plot this chart was derived from a bedGrpah file that looked like this:
Thank you very much for the time you spend to read this and understand my problem!
Edit: The commands I used to get this chart:
computeMatrix reference-point -S GSM1668531_TET2_ChIP.ucsc.bw -R tl.bed bg_0.bed -o matrix_bg_0.mat.gz plotProfile matrix_bg_0.mat.gz -o tl_and_bg_0.png