Question: karyoploteR: black, gray and red shades in ideogram
1
gravatar for guinevere.q.lee
12 months ago by
guinevere.q.lee10 wrote:

Hi all. I just installed karyotypeR. Sorry for my extremely basic question: plotKaryotype() gave me an ideogram without problem. My question is: What does the black, gray and red shades mean? I read several tutorial but still couldn't find any info. The code I used is just simply plotKaryotype(genome="hg38",plot.type=1) Thank you so much!

karyoploter R genome • 306 views
ADD COMMENTlink modified 11 months ago by Buffo1.8k • written 12 months ago by guinevere.q.lee10

Please use tags appropriately, you should have included karyoploteR. As such experts can easily find your question. And if possible, picking a more descriptive title would be great to cover what your question is about, e.g. "black, gray and red shades in karyoploteR" would be more to the point. Finally, it is often helpful to share the code you used and the image you obtained How to add images to a Biostars post.

ADD REPLYlink written 12 months ago by WouterDeCoster44k
1
gravatar for Buffo
11 months ago by
Buffo1.8k
Buffo1.8k wrote:

Those blocks indicate the Cytogenetic bands. But at least you are interested on them, you can personalize your plots as you can see in the tutorial.

ADD COMMENTlink written 11 months ago by Buffo1.8k
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