Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Question: alignment with phylogenetic tree
0
gravatar for qwzhang0601
15 months ago by
qwzhang0601 • 70
United States
qwzhang0601 • 70 wrote:

I have phylogenetic tree of 100 species, and I also have the multiple sequence alignment file for a gene we are interested in. I wonder whether there is some tool to generate a plot which shows both phylogenetic tree of the 100 species and sequence alignment of the gene from 100 species?

Thanks
multiple sequence alignment phylogenetic tree • 902 views
ADD COMMENT • link •
modified 15 months ago • written 15 months ago by qwzhang0601 • 70
0
gravatar for Mensur Dlakic
15 months ago by
Mensur Dlakic • 7.3k
USA
Mensur Dlakic • 7.3k wrote:

MEGA does both things you want, though it is not my tool of choice for either task. Is there a reason you need to use a single program for both tasks?
ADD COMMENT • link written 15 months ago by Mensur Dlakic • 7.3k
0
gravatar for qwzhang0601
15 months ago by
qwzhang0601 • 70
United States
qwzhang0601 • 70 wrote:

Thank you! Briefly, I want to show multiple sequencing alignment. Some sites under positive selection may evolve differently among different species. So I want to order the sequences according to the phylogenetic tree of those species. Thanks
ADD COMMENT • link written 15 months ago by qwzhang0601 • 70
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1872 users visited in the last hour