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Question: alignment with phylogenetic tree
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gravatar for qwzhang0601
18 months ago by
qwzhang0601 • 70
United States
qwzhang0601 • 70 wrote:

I have phylogenetic tree of 100 species, and I also have the multiple sequence alignment file for a gene we are interested in. I wonder whether there is some tool to generate a plot which shows both phylogenetic tree of the 100 species and sequence alignment of the gene from 100 species?

Thanks
multiple sequence alignment phylogenetic tree • 960 views
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modified 18 months ago • written 18 months ago by qwzhang0601 • 70
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gravatar for Mensur Dlakic
18 months ago by
Mensur Dlakic • 9.2k
USA
Mensur Dlakic • 9.2k wrote:

MEGA does both things you want, though it is not my tool of choice for either task. Is there a reason you need to use a single program for both tasks?
ADD COMMENT • link written 18 months ago by Mensur Dlakic • 9.2k
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gravatar for qwzhang0601
18 months ago by
qwzhang0601 • 70
United States
qwzhang0601 • 70 wrote:

Thank you! Briefly, I want to show multiple sequencing alignment. Some sites under positive selection may evolve differently among different species. So I want to order the sequences according to the phylogenetic tree of those species. Thanks
ADD COMMENT • link written 18 months ago by qwzhang0601 • 70
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