Question: alignment with phylogenetic tree
0
gravatar for qwzhang0601
18 months ago by
qwzhang060170
United States
qwzhang060170 wrote:

I have phylogenetic tree of 100 species, and I also have the multiple sequence alignment file for a gene we are interested in. I wonder whether there is some tool to generate a plot which shows both phylogenetic tree of the 100 species and sequence alignment of the gene from 100 species?

Thanks

ADD COMMENTlink modified 18 months ago • written 18 months ago by qwzhang060170
0
gravatar for Mensur Dlakic
18 months ago by
Mensur Dlakic9.2k
USA
Mensur Dlakic9.2k wrote:

MEGA does both things you want, though it is not my tool of choice for either task. Is there a reason you need to use a single program for both tasks?

ADD COMMENTlink written 18 months ago by Mensur Dlakic9.2k
0
gravatar for qwzhang0601
18 months ago by
qwzhang060170
United States
qwzhang060170 wrote:

Thank you! Briefly, I want to show multiple sequencing alignment. Some sites under positive selection may evolve differently among different species. So I want to order the sequences according to the phylogenetic tree of those species. Thanks

ADD COMMENTlink written 18 months ago by qwzhang060170
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