Question: alignment with phylogenetic tree
0
gravatar for qwzhang0601
15 months ago by
qwzhang060170
United States
qwzhang060170 wrote:

I have phylogenetic tree of 100 species, and I also have the multiple sequence alignment file for a gene we are interested in. I wonder whether there is some tool to generate a plot which shows both phylogenetic tree of the 100 species and sequence alignment of the gene from 100 species?

Thanks

ADD COMMENTlink modified 15 months ago • written 15 months ago by qwzhang060170
0
gravatar for Mensur Dlakic
15 months ago by
Mensur Dlakic7.3k
USA
Mensur Dlakic7.3k wrote:

MEGA does both things you want, though it is not my tool of choice for either task. Is there a reason you need to use a single program for both tasks?

ADD COMMENTlink written 15 months ago by Mensur Dlakic7.3k
0
gravatar for qwzhang0601
15 months ago by
qwzhang060170
United States
qwzhang060170 wrote:

Thank you! Briefly, I want to show multiple sequencing alignment. Some sites under positive selection may evolve differently among different species. So I want to order the sequences according to the phylogenetic tree of those species. Thanks

ADD COMMENTlink written 15 months ago by qwzhang060170
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1872 users visited in the last hour