Question

Cancer Cell Line WGS

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4.7 years ago

denis.k ▴ 20

Hey Biostars!

Was wondering if someone could help me out with this problem. I am looking for WGS data from cancer cell lines but have struggled to find any repositories online that store the BAM's or FASTQs. Does anyone have any insight on where I can look?

Thank you in advance!

WGS next-gen sequencing • 884 views

ADD COMMENT • link updated 4.7 years ago by ATpoint 81k • written 4.7 years ago by denis.k ▴ 20

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NCBI will house such data, but you will need to search for appropriate bio projects/cell lines etc so you will need to know what you’re looking for to some degree.

ADD REPLY • link 4.7 years ago by Joe 21k

score 2 · Answer 1 · 2019-08-22

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4.7 years ago

GenoMax 141k

Use sra-explorer to look. If you search with "cancer cell line WGS" there are lots of results for fastq data. Restrict as needed. Increase number of results as needed.

ADD COMMENT • link 4.7 years ago by GenoMax 141k

score 1 · Answer 2 · 2019-08-22

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4.7 years ago

ATpoint 81k

Here are a couple from Diffuse Large B Cell Lymphoma.

ADD COMMENT • link 4.7 years ago by ATpoint 81k