Hi I am new to bioinformatics and programming language. I am having trouble installing GATK following the biostar handbook. After install and register, it gives me error message
command gatk not found when entered
gatk -help. Hoping someone could help me with this.
I downloaded GATK3.8 from https://software.broadinstitute.org/gatk/download/auth?package=GATK-archive&version=3.8-1-0-gf15c1c3ef and then untar it by
tar xjf GATK3.8-1-0-gf15c1c3ef.tar.bz2 then
gatk3-register ~/GATK3.8-1-0-gf15c1c3ef/ and then it says it is copying to the environment but I cannot use it....
Please let me know if more information is needed.