Question: Error opening .bim file while running Admixture
1
gravatar for tsarvale
18 months ago by
tsarvale10
tsarvale10 wrote:

Hi All!

While running the following command:

for K in 1 2 3 4 5; do admixture --cv hapmap3.bed $K | tee log${K}.out; done

Such error came up:

Estimation of standard errors disabled; will compute point estimates only. Error opening .bim file!

admixture hapmap3.bed 3

command run with no problem

The binary plink files are already checked by quality control. Genotypes included are consisting of ~50K SNPs.

Do you have any idea how could I resolve it?

Thank you!

Valentina

ADD COMMENTlink modified 17 months ago by zx87549.9k • written 18 months ago by tsarvale10
0
gravatar for Alexandros Topaloudis
17 months ago by
Switzerland/Lausanne/UniL
Alexandros Topaloudis10 wrote:

Had the same problem, the name of the .bed file you specified or the path to it was erroneous. Check for typos.

ADD COMMENTlink written 17 months ago by Alexandros Topaloudis10
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