dndscv Error: can't change refdb file
0
1
Entering edit mode
4.6 years ago
1035655101 ▴ 10

I want to find driver mutations so I am trying to use dndscv tool. But, I am permanently getting this error

library(dndscv)
Warning message:
replacing previous import ‘Biostrings::translate’ by ‘seqinr::translate’ when loading ‘dndscv’

data("dataset_simbreast", package="dndscv")
dndsout = dndscv(mutations, refdb="refcds_hg19.rda", cv=NULL)
[1] Loading the environment...
Error in readChar(con, 5L, useBytes = TRUE) : cannot open the connection
In addition: Warning message:
In readChar(con, 5L, useBytes = TRUE) :
  cannot open compressed file 'refcds_hg19.rda', probable reason 'No such file or directory'

But, 'refcds_hg19.rda' is present.

Does anyone know how I can solve this error?

R dndscv • 1.2k views
ADD COMMENT

Login before adding your answer.

Traffic: 2673 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6