Hello all,
My name is krishna. I'm using Mutmap plus and QTL seq framework for my QTL seq (Quantitative trait locus). I'm posting this question because there is no site with info regarding the errors in the above mentioned frameworks. I request you all to please help me where can i find a solution. I'm not listing the errors just because there are lot many. If these frameworks are reliable to proceed with QTLseq ? If not please suggest me the best pipelines for QTL analysis.
Description of the data i have:
Total samples=8 (~7+7G .gz PE files)
MAPPING FOR TOMATO GBNV
T1 - IIHR-2901 - RESISTANT PARENT
T2 - IIHR-2265 - SUSCEPTIBLE PARENT
T3 - RESISTANT BULK - F2 OF IIHR-2265 X IIHR-2901
T4 - SUSCEPTIBLE BULK - F2 OF IIHR-2265 X IIHR-2901
MAPPING FOR TOMATO EARLY BLIGHT
E1 - IIHR-2620 - SUSCEPTIBLE PARENT
E2 - IIHR-2891 - RESISTANT PARENT
E3 - SUSCEPTIBLE BULK - F2 OF IIHR-2620 X IIHR-2891
E4 - RESISTANT BULK - F2 OF IIHR-2620 X IIHR-2891
Config of my server:
No of CPU cores : 24
RAM : 512G
Storage : 5T
OS : Ubuntu 12.0.4 LTS
Please help me with your suggestions,
Thank you very much in advance..
Dear all,
I am excited to announce that a new version of the QTLseq pipeline has been released (Release date: 26/07/2019) and recently updated on 27/04/2022. This updated version incorporates the latest tools and enhancements, ensuring a more robust and error-free experience. You can access the updated pipeline through the following link: https://genome-e.ibrc.or.jp/resource/mutmap
Thank you for your attention and happy exploring!