Tool for obtaning genes modulated by a list of TF
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4.7 years ago
Eisuan ▴ 20

Given a list of TFs, are there tools that are able to give me the list of genes known to be regulated by these TFs?

gene • 965 views
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4.7 years ago
natasha.sernova ★ 4.0k

1) See the post below. It looks very close to your question.

Tf And Gene(S) Regulated By Them

2) The following post looks as a repeat of your question, but the answer is not direct IMHO.

extracting targe genes of a list of TFs

3) If the information above is not enough, try to look at this article as well:

iRegulon: From a Gene List to a Gene Regulatory Network Using Large Motif and Track Collections

Rekin's Janky, Annelien Verfaillie, Hana Imrichová, Bram Van de Sande, Laura Standaert, 
Valerie Christiaens, Gert Hulselmans,  …

https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003731

4) What species interest you? There are some plant similar questions in 'Biostars', for example.

But you may need information like that:

Tf-Target Enrichment Analysis

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Thank you so much :) Your suggestions were really helpfull

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