Question: How to retrieve protein sequence data for humano in UniProt?
0
gravatar for carlos_marchi
6 weeks ago by
Brazil, Sorocaba, UFABC
carlos_marchi40 wrote:

Hi,

I tried to retrieve protein sequence data from UniProt site, however, I haven't downloaded the data because is huge files ( about 130GB). I suppose, there are all species in that file.

Is there a manner to download just protein sequence data from UniProt specific for human?

Thank you very much.

Carlos

ADD COMMENTlink modified 6 weeks ago by a.zielezinski8.9k • written 6 weeks ago by carlos_marchi40
1

You can use the advance search option with selecting taxonomy from dropdown and then putting in 9606 (the taxonomy id of human) The autocomplete should suggest accordingly.

ADD REPLYlink written 6 weeks ago by microfuge1.4k
2
gravatar for a.zielezinski
6 weeks ago by
a.zielezinski8.9k
a.zielezinski8.9k wrote:

Yes, you can easily download all human protein sequences.

  1. Go to UniProt homepage.
  2. Limit the search to human proteins by typing in the search box organism:"Homo sapiens (Human) [9606]".
  3. Download the FASTA sequences (Download button).
ADD COMMENTlink written 6 weeks ago by a.zielezinski8.9k
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