Run Ray Assembler with multiple kmer values
0
0
Entering edit mode
5.1 years ago

Hello people.

I am using Ray assembler, however, I want to run it with kmer values 21, 31, 55, 77, 99 and 127.

Is there any way to run everything simultaneously? How does it happen with SPAdes?

Thank you very much in advance!

Assembly genome gene ray spades • 912 views
ADD COMMENT
0
Entering edit mode

I do not believe that you can, SPAdes is coded with the idea that it will be comparing different kmers to find the best build. Ray is written with the idea of just one. You could try using kmergenie on your reads to see if there is an optimum kmer you should be using.

ADD REPLY
0
Entering edit mode

Oh I see. Thanks for answer :)

ADD REPLY

Login before adding your answer.

Traffic: 811 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6