how generated haploid variants by varscan
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2.1 years ago
kamel ▴ 30

Hello colleagues

I am working on haploid genomes and I would like to know with which parameter I could launch "varscan mpileup2snp" to consider haploid variants.

Or how to extract only haploid variants from vcf file generated by varscan ?

Thank you in advance

SNP INDEL Varscan Haploid • 435 views
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