How to find significantly mutually exclusive expressed genes in TCGA
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4.8 years ago
Mike ★ 1.9k

Hi everyone,

I want to check how some of my interesting genes are statistical significantly mutually exclusive expressed in BRCA-TCGA expression data. Does anyone know how to do this?

Thanks

RNA-Seq mutual expression correlation • 1.4k views
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Mutually exclusive expressed genes or mutually expressed genes?

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I am looking for mutually exclusive expressed genes

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The easiest way is to run Correlation Test for each pair of genes. But there maybe some limitations.

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4.8 years ago
27atcggcta27 ▴ 180

I'm not sure I understand the question, but have you tried using rMATS? (Detection of splice variants ex. mutually exclusive exons)

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rMATS is for detect differential alternative splicing events.

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