identify total number of OTUs and total number of reads
0
0
Entering edit mode
4.6 years ago

Can anyone help me to know what is the total number of OTUs and the total number of reads or sequences.

These are my data otu table summarize.txt

Num samples: 30
Num observations: 20,608
Total count: 1,033,402
Table density (fraction of non-zero values): 0.103

Counts/sample 
summary:
Min: 9,891.000
Max: 71,706.000
Median: 32,694.500
Mean: 34,446.733
Std. dev.: 14,009.116
Sample Metadata Categories: None provided
Observation Metadata Categories: taxonomy

Counts/sample detail:
otu otu table summarize • 1.0k views
ADD COMMENT

Login before adding your answer.

Traffic: 2646 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6