Question: stats file in Mutect2 calling
0
gravatar for dentepre
12 weeks ago by
dentepre0
dentepre0 wrote:

Hi,

I'm performing somatic variant calling with Mutect2. However, besides the *.vcf file, the stats file is not generated.

The Genome Analysis Toolkit (GATK) v4.1.2.0 HTSJDK Version: 2.19.0 Picard Version: 2.19.0

gatk Mutect2 -R hg38.fa -I normal.bam --normal normal -I tumour.bam --tumor tumour -O results/mutect/summary.vcf

Where is my mistake? How can I force to generate stats file?

gatk • 202 views
ADD COMMENTlink modified 19 days ago by vipulbhatia240 • written 12 weeks ago by dentepre0
0
gravatar for vipulbhatia24
19 days ago by
vipulbhatia240 wrote:

Hello,

I also encountered the same problem. Were you able to resolve this?

If someone can help please.

ADD COMMENTlink written 19 days ago by vipulbhatia240
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1864 users visited in the last hour