Question: How to improve legend of circular manhatton
0
gravatar for Manoj
15 days ago by
Manoj30
Canada
Manoj30 wrote:

I need to improve my circular manhattan plot. Please see plot at following link, where I need to change names of circular legend such as bio34, bio78 and so on rather than Chr1..Chr14. Here, is my code that I am using for this plot, please suggest improvement in the code..

CMplot(manhat,plot.type="c",r=0.4,col=c("grey30","grey60"),chr.labels=paste("Chr", c(1:14,"X"),sep=""), LOG10=TRUE,
cir.chr.h=1.5,amplify=TRUE,threshold.lty=c(1,2),threshold.col=c("red",
"blue"),signal.line=1,signal.col=c("red","green"),chr.den.col=c("darkgreen","yellow","red"),
bin.size=1e6,outward=FALSE,file="jpg",memo="",dpi=600,file.output=TRUE,verbose=TRUE,width=10,height=10)

https://ibb.co/s2VMHcs

R • 133 views
ADD COMMENTlink modified 14 days ago • written 15 days ago by Manoj30

How to add images to a Biostars post

ADD REPLYlink written 14 days ago by WouterDeCoster41k
0
gravatar for zx8754
14 days ago by
zx87548.2k
London
zx87548.2k wrote:

Just a guess, I think you need to change this:

chr.labels = paste("Chr", c(1:14, "X"), sep = "")

to:

chr.labels = c("bio34", "bio78", ...)
ADD COMMENTlink written 14 days ago by zx87548.2k

Thanks, moving forward, how to put scale log10 for p-value in the code.

ADD REPLYlink modified 13 days ago • written 14 days ago by Manoj30

Also, I need legends inner side of the circle rather than out side...

ADD REPLYlink written 13 days ago by Manoj30

Ask a new question.

ADD REPLYlink written 13 days ago by zx87548.2k
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