Exporting krona chart information to plain text

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4.6 years ago

Diego Morais • 0

Is there some way to export the content displayed in the krona chart as text?

I mean something like this:

query_taxid superkingdom    kingdom phylum  class   order   family  genus   species

9606    Eukaryota   Metazoa Chordata    Mammalia    Primates    Hominidae   Homo    Homo sapiens

10090   Eukaryota   Metazoa Chordata    Mammalia    Rodentia    Muridae Mus Mus musculus

1000590 Bacteria    NONE    Firmicutes  Bacilli Bacillales  Staphylococcaceae   Staphylococcus  Staphylococcus epidermidis

I got this result using the ktClassifyBLAST and ete3, but for some taxids I got no information for some ranks, which do not occur in the krona chart.

krona • 1.7k views

ADD COMMENT • link updated 2.3 years ago by Ricardo • 0 • written 4.6 years ago by Diego Morais • 0

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Are you referring to this software package? It would be good to include this information since there can be packages with similar names.

ADD REPLY • link 4.6 years ago by GenoMax 141k

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Yes, thanks for the suggestion, the question has been edited.

ADD REPLY • link 4.6 years ago by Diego Morais • 0

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Hi Diego. Did you find an answer to this problem?

ADD REPLY • link 2.3 years ago by Ricardo • 0

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