Question: genomic reads count
gravatar for 13263617869xf
13 days ago by
13263617869xf0 wrote:

Hi everyone,i want to count exon、intron、intergenic、exon-exon、exon-intron reads,now i konw how to use the bedtools like tools to solve tie problem,but i think my solution will have overlap count with them(need to prepare bed file form GTF file),so has anyone have new solution or a tools or packages to deal this problem,thanks!

rna-seq • 105 views
ADD COMMENTlink modified 13 days ago by WouterDeCoster41k • written 13 days ago by 13263617869xf0

[ Please read before posting a question ] -- How To Ask A Good Question

What have you tried so far? Do you have a .sam or a .bam file or raw sequencing reads in .fastq format?

ADD REPLYlink modified 13 days ago • written 13 days ago by Sej Modha4.4k
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