Question: genomic reads count
0
gravatar for 13263617869xf
13 days ago by
13263617869xf0 wrote:

Hi everyone,i want to count exon、intron、intergenic、exon-exon、exon-intron reads,now i konw how to use the bedtools like tools to solve tie problem,but i think my solution will have overlap count with them(need to prepare bed file form GTF file),so has anyone have new solution or a tools or packages to deal this problem,thanks!

rna-seq • 105 views
ADD COMMENTlink modified 13 days ago by WouterDeCoster41k • written 13 days ago by 13263617869xf0

[ Please read before posting a question ] -- How To Ask A Good Question

What have you tried so far? Do you have a .sam or a .bam file or raw sequencing reads in .fastq format?

ADD REPLYlink modified 13 days ago • written 13 days ago by Sej Modha4.4k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1910 users visited in the last hour