Question: genomic reads count
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gravatar for 13263617869xf
11 months ago by
13263617869xf0 wrote:

Hi everyone,i want to count exon、intron、intergenic、exon-exon、exon-intron reads,now i konw how to use the bedtools like tools to solve tie problem,but i think my solution will have overlap count with them(need to prepare bed file form GTF file),so has anyone have new solution or a tools or packages to deal this problem,thanks!

rna-seq • 250 views
ADD COMMENTlink modified 5 months ago by Biostar ♦♦ 20 • written 11 months ago by 13263617869xf0

[ Please read before posting a question ] -- How To Ask A Good Question

What have you tried so far? Do you have a .sam or a .bam file or raw sequencing reads in .fastq format?

ADD REPLYlink modified 11 months ago • written 11 months ago by Sej Modha4.7k
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