Isoform level TCGA RNA-seq Expression data
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3.7 years ago
deepak18 ▴ 10

I have Isoform level RNA-seq data from The Cancer Genome Atlas and I want to check the difference the difference in the level of a particular isoform between cancer and normal samples. Is there any software or R package which I can use to plot a boxplot showing difference in that isoform between normal and cancer sample with p-value?

RNA-Seq tcga isoform_expression R linux • 1.5k views
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If I may ask, how did you obtain Isoform level RNA-seq data from TCGA? I am trying to do so via TCGAbiolinks R package, however, without positive results

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3.7 years ago
igor 13k

You can try ggpubr.

Example plot:

enter image description here

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