Question: Gene ontology for biological processes from differentially expressed genes
0
gravatar for lucatucciarone
13 days ago by
lucatucciarone50 wrote:

This is a post to better understand what is your favorite tool to perform gene ontology for biological processes from differentially expressed genes (RNA-seq Data).

There are a lot of tools over the internet, for now I'm been using IPA (Luckily my institute has a subscription) but I find it sometimes not completely coherent.

To make you better understand what I'm searching for, in the dream world I would need (From differentially expressed genes) one or more tools that would:

1) Give me a z-score list of the most modulated biological functions 2) Understand what are the pathways that modulate those functions 3) Understand the "Up-stream reagulators" of those pathways that modulates the functions above.

I know that IPA, in theory, can exactly do that, but once again, I don't see a lot of coherence in my experience with it!

rna-seq • 71 views
ADD COMMENTlink written 13 days ago by lucatucciarone50
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1927 users visited in the last hour