Question: Merging unaligned bam files
0
gravatar for irfanwustl
10 months ago by
irfanwustl0
irfanwustl0 wrote:

I have two WGBS unaligned bam files (fastq files stored as unaligned bam). I am wondering can I merge those files? Does samtools merge works for unaligned bams?

Thanks

next-gen • 272 views
ADD COMMENTlink written 10 months ago by irfanwustl0
1

What is wrong with samtools cat?

ADD REPLYlink written 10 months ago by Gabriel R.2.7k
3
gravatar for ATpoint
10 months ago by
ATpoint36k
Germany
ATpoint36k wrote:

merge combines data while respecting sort order, but as you do not have any you can simply concatenate them with samtools cat.

ADD COMMENTlink written 10 months ago by ATpoint36k
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