Question: Inserting bash and bioinformatic's scripts into browser database
0
gravatar for flogin
5 weeks ago by
flogin150
FioCruz/Brazil
flogin150 wrote:

Hello everyone, I'm reading about database creation, and I didn't find a good material for one question (probably because I make the wrong questions).

My question is: If I want to put algorithms and scripts inside a MySQL database implement in Java and HTML how I can do this?

for example: to create functionalities as BLAST analysis, alignments with Mafft and construction of ML phylogenetic trees I should use any specific package, or I can just create an interface for the user input fasta files and send those files for a server to run those scripts?

Can anyone send-me online materials do study this?

Thanks

bash script browser java python • 90 views
ADD COMMENTlink written 5 weeks ago by flogin150

, or I can just create an interface for the user input fasta files and send those files for a server to run those scripts?

don't try to revent the wheel : https://usegalaxy.org/

ADD REPLYlink written 5 weeks ago by Pierre Lindenbaum123k

Nice, but can I create an interactive ambient between my database and galaxy?

ADD REPLYlink written 5 weeks ago by flogin150

Nice, but can I create an interactive ambient between my database and galaxy?

this would just a be a custom tool querying your database.

ADD REPLYlink written 5 weeks ago by Pierre Lindenbaum123k
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