Inserting bash and bioinformatic's scripts into browser database
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2.1 years ago
flogin ▴ 270

Hello everyone, I'm reading about database creation, and I didn't find a good material for one question (probably because I make the wrong questions).

My question is: If I want to put algorithms and scripts inside a MySQL database implement in Java and HTML how I can do this?

for example: to create functionalities as BLAST analysis, alignments with Mafft and construction of ML phylogenetic trees I should use any specific package, or I can just create an interface for the user input fasta files and send those files for a server to run those scripts?

Can anyone send-me online materials do study this?

Thanks

browser script bash java python • 390 views
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, or I can just create an interface for the user input fasta files and send those files for a server to run those scripts?

don't try to revent the wheel : https://usegalaxy.org/

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Nice, but can I create an interactive ambient between my database and galaxy?

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Nice, but can I create an interactive ambient between my database and galaxy?

this would just a be a custom tool querying your database.

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