Hi all! Is such a result ( https://imgur.com/DGxsFN7 ) concerning if the overall goal is to do de-novo genome assembly?
I continued with the data as is, assembled and predicted proteins and I did find that some proteins were duplicated (not sure if this is caused by what we see above?) anyways I then used a software for assembling heterozygous genomes and saw some improvement in # of duplicated proteins, but im unsure if this is the proper solution for this failed fastqc module. Any insight is greatly appreciated.
Additional info: I have 200bp paired reads and high coverage (~1000X)