Question: converting SRA to Fastq file by fastq-dump
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gravatar for tikshyadav19
14 months ago by
tikshyadav190 wrote:

how to convert SRRXXXXXX.sra to SRRXXXXXX.fastq using fastq-dump using linux comands?

fastq-clump sra to fastq • 598 views
ADD COMMENTlink written 14 months ago by tikshyadav190

Better to not download SRAs in the first place and just get the FASTQs: Fast download of FASTQ files from the European Nucleotide Archive (ENA)

ADD REPLYlink written 14 months ago by igor11k

If you still insist on using SRA, on the bottom of that tutorial there is a short section on that as well. Still, simply reading the fastq-dump manual would have answered that question as well ;-)

ADD REPLYlink written 14 months ago by ATpoint42k
1

With ENA, there is not even a need a to read any manual :)

ADD REPLYlink modified 14 months ago • written 14 months ago by igor11k

True. I am a big fan of ENA, that is why I wrote that tutorial in the first place :)

ADD REPLYlink written 14 months ago by ATpoint42k
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