converting SRA to Fastq file by fastq-dump

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4.6 years ago

tikshyadav19 • 0

how to convert SRRXXXXXX.sra to SRRXXXXXX.fastq using fastq-dump using linux comands?

sra to fastq fastq-clump • 1.7k views

ADD COMMENT • link 4.6 years ago by tikshyadav19 • 0

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Better to not download SRAs in the first place and just get the FASTQs: Fast download of FASTQ files from the European Nucleotide Archive (ENA)

ADD REPLY • link 4.6 years ago by igor 13k

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If you still insist on using SRA, on the bottom of that tutorial there is a short section on that as well. Still, simply reading the fastq-dump manual would have answered that question as well ;-)

ADD REPLY • link 4.6 years ago by ATpoint 81k

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With ENA, there is not even a need a to read any manual :)

ADD REPLY • link 4.6 years ago by igor 13k

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True. I am a big fan of ENA, that is why I wrote that tutorial in the first place :)

ADD REPLY • link 4.6 years ago by ATpoint 81k

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