converting SRA to Fastq file by fastq-dump
0
0
Entering edit mode
2.7 years ago

how to convert SRRXXXXXX.sra to SRRXXXXXX.fastq using fastq-dump using linux comands?

sra to fastq fastq-clump • 1.2k views
ADD COMMENT
0
Entering edit mode

Better to not download SRAs in the first place and just get the FASTQs: Fast download of FASTQ files from the European Nucleotide Archive (ENA)

ADD REPLY
1
Entering edit mode

If you still insist on using SRA, on the bottom of that tutorial there is a short section on that as well. Still, simply reading the fastq-dump manual would have answered that question as well ;-)

ADD REPLY
1
Entering edit mode

With ENA, there is not even a need a to read any manual :)

ADD REPLY
1
Entering edit mode

True. I am a big fan of ENA, that is why I wrote that tutorial in the first place :)

ADD REPLY

Login before adding your answer.

Traffic: 1479 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6