Question: converting SRA to Fastq file by fastq-dump
0
gravatar for tikshyadav19
3 months ago by
tikshyadav190 wrote:

how to convert SRRXXXXXX.sra to SRRXXXXXX.fastq using fastq-dump using linux comands?

fastq-clump sra to fastq • 144 views
ADD COMMENTlink written 3 months ago by tikshyadav190

Better to not download SRAs in the first place and just get the FASTQs: Fast download of FASTQ files from the European Nucleotide Archive (ENA)

ADD REPLYlink written 3 months ago by igor8.9k

If you still insist on using SRA, on the bottom of that tutorial there is a short section on that as well. Still, simply reading the fastq-dump manual would have answered that question as well ;-)

ADD REPLYlink written 3 months ago by ATpoint26k
1

With ENA, there is not even a need a to read any manual :)

ADD REPLYlink modified 3 months ago • written 3 months ago by igor8.9k

True. I am a big fan of ENA, that is why I wrote that tutorial in the first place :)

ADD REPLYlink written 3 months ago by ATpoint26k
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