Hello, I'm new to RNA-seq and R and what I need to do seems easy enough but I can't find answers. I have a log2fc matrix of >60k gene rows and 9 columns for n=3 reps of conditions. This file is called "allnoig"
> head(allnoig)
a.1 a.2 a.3 b.1
DDX11L1 -0.0009149667 -0.0003525518 0.007609285 -0.0006162814
WASH7P 0.0122970288 -0.0255903899 0.077002423 0.0658547244
MIR6859-1 -0.2469086552 -0.2163589684 -0.057892591 0.0041760959
This goes all the way to c.3. I have a list of ~70 genes that I would like to extract the row informations for. I have entered the 70 genes into a new .cvs and it's called "list"
head(list)
Symbol
1 ABTB2
2 ANGPTL4
3 ATF3
4 BATF3
I've tried
subsetlist <- subset(allnoig, row.names %in% list)
and I get the error "Error in match(x, table, nomatch = 0L) : 'match' requires vector arguments"
Please help!
Hurray! Thank you so much.