Question: ClueGO - Cytoscape - GO terms
0
gravatar for juber
10 months ago by
juber0
juber0 wrote:

Does someone know from where comes from the GO terms that ClueGo uses?. Ensembl?, http://geneontology.org/?.

Thanks in advance.

Juber.

rna-seq cytoscape cluego genome • 556 views
ADD COMMENTlink modified 9 months ago by scooter340 • written 10 months ago by juber0
0
gravatar for scooter
9 months ago by
scooter340
scooter340 wrote:

From the Supplementary material in their paper:

"ClueGO allows also KEGG updates via SOAP API. ClueGO KEGG based files will have in the name the date of the download. The KEGG update rate: http://www.genome.jp/en/info dbget.html. Since Biocarta is not frequently changing and only supports human and mouse, updates will be supplied with each new release of ClueGO. BioCarta source files are taken from REACTOME via SOAP API. Source files and interfaces used: 1. GO Ontology, in OBO format: ftp://ftp.geneontology.org/pub/go/ontology/gene ontology edit.obo 2. GO Annotation files: ftp://ftp.geneontology.org/pub/go/gene-associations/ 3. KEGG API: http://www.genome.jp/kegg/soap/ 4. Biocarta API: http://www.reactome.org/download/index.html"

-- scooter

ADD COMMENTlink written 9 months ago by scooter340
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