I have 218 fastq files i.e,(109*2), each of which have files named in the format as following
SRR8224532_1.fastq , SRR8224532_2.fastq , SRR8224533_1.fastq , SRR8224533_2.fastq, . . . . . .**(upto)** . . . . . . SRR8224640_1.fastq, SRR8224640_2.fastq
For each SRR accession number two fastq files.
The problem is, i want to run spades.py as follows;
spades.py -1 SRR8224532_1.fastq -2 SRR8224532_2.fastq -0 SRR8224532-out
Is it's possible to run spades.py for all 109 files (109*2) in the similar way as mentioned above?? Thank You in advance.