Question: Extracting germline variants from somatic variants
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gravatar for Nelislam4
13 months ago by
Nelislam420
Nelislam420 wrote:

Hi,

I have two somatic variants vcf files SNVs and Indels for cancer and normal tissue had variant caller of VarscanSomatic, Strelka, Pindel, GatkSomaticIndel, and Sniper.

How could I know that these files have germline variants? and If it has, How can I extract the germline variants from somatic one?

Please Help

snp • 271 views
ADD COMMENTlink written 13 months ago by Nelislam420
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