Question: Extracting germline variants from somatic variants
gravatar for Nelislam4
13 months ago by
Nelislam420 wrote:


I have two somatic variants vcf files SNVs and Indels for cancer and normal tissue had variant caller of VarscanSomatic, Strelka, Pindel, GatkSomaticIndel, and Sniper.

How could I know that these files have germline variants? and If it has, How can I extract the germline variants from somatic one?

Please Help

snp • 271 views
ADD COMMENTlink written 13 months ago by Nelislam420
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1959 users visited in the last hour