Question: combine nucleotide and amino acid sequence in same figure
0
gravatar for najibveto
12 weeks ago by
najibveto40
Korea, Republic Of
najibveto40 wrote:

hello I would like to make a figure where the nucleotide and amino acides are combined as similar to this figure: cdna and amino acides sequences

protein gene • 158 views
ADD COMMENTlink modified 12 weeks ago by ATpoint26k • written 12 weeks ago by najibveto40
2

EMBOSS showorf or plotorf can also be used. Web interface for showorf here. A collection of related EMBOSS programs is here.

ADD REPLYlink modified 12 weeks ago • written 12 weeks ago by genomax75k

hello i tried plotorf and showorf. the plotorf gave a graph of the orf without the sequence. the showorf doesnt allow to get similar figure. thank you for your help.

ADD REPLYlink written 12 weeks ago by najibveto40
1

Did you look at other programs I linked above? prettyseq gives a similar output. Here is the web interface for prettyseq.

ADD REPLYlink modified 12 weeks ago • written 12 weeks ago by genomax75k

I tried now, when i add the utr sequence, the translation start from them so i got translation starting from utr.

ADD REPLYlink written 12 weeks ago by najibveto40

thank you a lot for your help, i just figure it out now. one question if possible, how to modify the text file to get an image file. I tried to do that using word but didnt work well.

ADD REPLYlink written 12 weeks ago by najibveto40
3
gravatar for ATpoint
12 weeks ago by
ATpoint26k
Germany
ATpoint26k wrote:

Use e.g. ExPASY translate (https://web.expasy.org/translate/) and select the output option Includes nucleotide sequence. You can save the output as txt file which essentially looks like this.

ADD COMMENTlink written 12 weeks ago by ATpoint26k

thank you, I already tried but dont give similar results.

ADD REPLYlink written 12 weeks ago by najibveto40
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