Question: Filter gene list for membrane expressed protein
0
gravatar for guillaume.rbt
12 months ago by
guillaume.rbt800
France
guillaume.rbt800 wrote:

Hi all,

I have a list of human genes and I want to extract those that code for protein expressed at cell membrane. Does anyone know how I could achieve that?

Thanks for any input

ADD COMMENTlink modified 12 months ago • written 12 months ago by guillaume.rbt800
4
gravatar for microfuge
12 months ago by
microfuge1.8k
microfuge1.8k wrote:

Could filter in ensemble biomart could work ? (myself have not tried it), but something like

  • Upload id list in ensemble biomart -> ensembl genes -> human -> filter
  • Then in filter -> "GO Term Accession" -> appropriate go accession (like GO Term Accession GO:0050789)
  • Results can be customized to give id types wanted
ADD COMMENTlink written 12 months ago by microfuge1.8k

Is there any prepared txt/excel files for human membrane protein gene symbols?

ADD REPLYlink written 8 months ago by Shicheng Guo8.3k
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