Question: How to find list of significant genes (hyper and hypomethylated) in minfi after running bumphunter
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gravatar for sinha.puja
9 months ago by
sinha.puja10
sinha.puja10 wrote:

Hi,

I am trying to run EPIC array data for methylation analysis using minfi package in R but my question is that after running bumphunter to get differentially methylated regions (DMRs), I wanted to extract the list of significant genes associated with these DMRs. I know minfi package doesn't have the provision to do but is there any way to calculate the list of differentially methylated genes with p-values. Helping in this regard will be highly appreciated if anyone having similar issues or knowing the solution.

Thanks.

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