Hi all, new to bioinformatics and have what I think is a pretty basic question. I'm attempting to use hail to import a vcf file from the gnomad website (https://gnomad.broadinstitute.org/downloads). I've successfully created a python session in the terminal and loaded hail, now just trying to use import_vcf(), which should work by just taking one argument, the path to the file.
In : chr1_test_file = hl.import_vcf('/gnomad-public/release/2.1/vcf/exomes/gnomad.exomes.r2.1.sites.chr1.vcf.bgz')
Here is my warning:
2019-09-20 15:24:25 Hail: WARN: `/gnomad-public/release/2.1/vcf/exomes/gnomad.exomes.r2.1.sites.chr1.vcf.bgz' refers to no files
I imagine my problem is just that I don't have the correct path, but I wasn't quite sure what that would be...