I'm new in working with metagenomic data, I'm trying to identify bacterial/biosynthetic clusters (BCG's) with the aim of determining the co-expression of a certain number of these clusters (once identified previously).
For cluster identification I was using a script to use antismash later supported with Big-Scape, I already ran the antismash algorithm on my gbk files.
I need help/guidance for analyzing the co-expression of these given clusters. Is there a certain platform I can use or should I just write a script to determine the co-expression of these (how to do this/what approach?)
Addtionally I would like to create a list to identify Biosynthetic Gene Cluster (BGC) type.
Thank you so much in advanced :))))
for people with similar goals this tool might be useful https://academic.oup.com/nar/advance-article-abstract/doi/10.1093/nar/gkac371/6586868