I am trying to run RNA-SeQC and got the following error: Failed to parse the GTF: Detected non-unique Exon ID: ENSE00001957285
I am using Homo_sapiens.GRCh38.87.gtf. It's an exon that is assigned to 3 different transcripts in the GTF. Did anyone encounter this problem? If so, is it better to remove the exons completely or change the names of such exons?
Thanks in advance for your responses.