Question: How to extract reads from a particular gene from a metagenome
gravatar for Biok
7 weeks ago by
Biok0 wrote:

Hi everyone,

I have a very basic question, I have metagenomic samples and I want to extract reads from a particular gene (amoA gene) to see the diversity of this gene between samples but I am not sure what would be the best approach. Should I just blast the metagenomic reads against amoA sequences? or maybe it is better to assemble first and then blast and extract the sequences?

Thank you for your time!

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