RSEM generates zero byte size genomic bam file
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2.1 years ago
arozhok • 0

Running a typical rsem-calculate-expression command with the --output-genome-bam option. RNA-seq paired-end. STAR as aligner. Index generated from genome reference for STAR. Everything works, it generates counts and outputs two bam files. Trascriptomic bam looks ok. Genomic bam is a file of size zero bytes. Has anyone encountered this problem?

RNA-Seq RSEM .bam • 457 views
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