Question: Phages sequencing anaysis
1
gravatar for anasofiamoreira94
11 weeks ago by
anasofiamoreira9450 wrote:

Hello, Im sorry for this question, but i have trimmed fastq sequences of my phages. And now I would like to know the similarity between them, for instance how do I know the genus? can someone tell me how to do this? Thanks

sequencing phages ngs • 172 views
ADD COMMENTlink modified 6 weeks ago by Biostar ♦♦ 20 • written 11 weeks ago by anasofiamoreira9450
1

You need to do much more work first.

Trimming your reads is step 1 (if indeed, that's necessary at all). You now need to QC your reads, assemble them, likely annotate them, and then start using some comparative genomics tools (the most fundamental thing would be to start BLASTing parts of the assembly).

This is more work than can really be fully explained on the forum in a single answer other than at a high level, so I would suggest you familiarise yourself with papers, blog posts, tutorials etc.

ADD REPLYlink written 11 weeks ago by Joe15k

To add to this, checkout the tutorial tab for some great helpful tutorials! https://www.biostars.org/t/Tutorials/

ADD REPLYlink written 6 weeks ago by Amar620
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1198 users visited in the last hour