Question

How to build reference index for bowtie?

1

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4.6 years ago

akshay_ware ▴ 30

I am aligning RNA-Seq data to human genome reference hg38. How can I build the index using hg38.fa

Thanks in advance

RNA-Seq alignment assembly next-gen • 5.8k views

ADD COMMENT • link updated 4.6 years ago by Kevin Blighe 87k • written 4.6 years ago by akshay_ware ▴ 30

score 3 · Accepted Answer · 2019-09-30

3

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4.6 years ago

Kevin Blighe 87k

Bowtie

Bowtie2

ADD COMMENT • link 4.6 years ago by Kevin Blighe 87k