Question: About UCSC Browser
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gravatar for mjogi11293
6 weeks ago by
mjogi112930
mjogi112930 wrote:

How to find exon-intron boundaries, donor splice sites, position of donor splice sites, number of bases in each position and entropy in a chromosome using UCSC Browser?

sequence genome • 82 views
ADD COMMENTlink modified 6 weeks ago by natasha.sernova3.6k • written 6 weeks ago by mjogi112930

Is this an assignment question?

ADD REPLYlink written 6 weeks ago by genomax74k
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gravatar for natasha.sernova
6 weeks ago by
natasha.sernova3.6k
natasha.sernova3.6k wrote:

I asked your question in google.

One of the answers was the following:

https://academic.oup.com/nar/article/41/4/e51/2414628

It's a NAR-paper from 2013, read it - it answers most of your questions.

"TrueSight: a new algorithm for splice junction detection using RNA-seq."

Yang Li, Hongmei Li-Byarlay, Paul Burns, Mark Borodovsky, Gene E. Robinson, Jian Ma

Nucleic Acids Research, Volume 41, Issue 4, 1 February 2013, Page e51,

https://doi.org/10.1093/nar/gks1311

ADD COMMENTlink modified 6 weeks ago • written 6 weeks ago by natasha.sernova3.6k
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