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4.6 years ago
Hi all, I am doing a GO enrichment analysis of Differentially expressed genes. From David, I got a list of enriched GO terms which I used as an input for Revigo. I find the tree map view of REVIGO better than scatter and interaction plots, however i have some confusion with the interpretation. we can adjust the rectangle with value(p value or any other value) or by size. By size, they mean frequency of GO term in underlying Database. I don't really understand what is it? can someone explain please. Also, some of the terms don't show up when I click on "value" and I see all the terms being shown up by "size". Any ideas on which one is better? Thanks in advance :)
