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4.5 years ago
I need to find the binding genes of a given transcription factor using CHIP-chip. I was given a .sgr file, whcih contains the chromosome, the nucleotide position and a score for each nucleotide. I could visualize the patterns in IGB but I am interested in finding the genes to which the TF binds. Is there any tool out there to do the peak calling and the thresholding etc.. in .sgr files?
