Entering edit mode
4.6 years ago
vikram56j
•
0
can i know the procedure to perform singscore for a microarray dataset(affymetrix) and other signatures (gene-sets) . can anyone help with script in R
Have you looked at vignette and the manual?
Yes i followed the manual instruction and perform in R I want to perform singscore for a new dataset and gene-set i am facing problem while performing for a new dataset and gene-set
Please edit your question and add a reproducible example with exact error messages or descriptions of unexpected output. Please be as elaborate as you can with the error description.
I had edited the script and tried performing the program i have placed files in a folder and selected the directory but i am getting error can u suggest the format to input the file
The error message you’ve copy pasted here is incomplete. Please fix that and also add the output of
sessionInfo()
. You can edit your posts instead of adding additional comments when the intention is to correct an error in an existing comment.The problem is i am not able to input the dataset and gene-sets means in which file should i give the input. can u please suggest the file format or just give me a example file input for dataset and gene-sets and script. it would be helpful to me thank you i have modified the file format also still i am getting error object not found
Please fix the error message and give us the output of
sessionInfo()
. You also seem to have a typo: You've typed inGSE22377_expr_43_se
instead ofGSE22377_expr_43_set
.