I'm running IGV in batch mode following the steps described in the IGV website.
When I enter a command like the following one in the terminal, IGV opens, runs as expected, and saves a snapshot. Everything OK.
bash igv.sh --batch=script.txt
However, this is done by opening IGV including its graphical user interface (GUI). I think this is unnecessary and probably slows the program, but so far I have not been able to run IGV in batch mode without a GUI being opened automatically, nor when I remove the
new header command in the script, which is supposed to "open a new session" .
Any ideas on how to run IGV purely in CLI mode?