Question: Get single-cell technology used for certain sample
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gravatar for mariafirulevabio
10 months ago by
mariafirulevabio40 wrote:

Dear all,

Consider I have a large matrix with SRS, SRX, SRA, GSM, direct links to fastq.gz and some other fields. This matrix includes only scRNA-seq experiments for Mus musculus.

I want to know which single-cell technology used for certain sample, e.g., 10xv2, 10xv3, DropSeq, SCRBSeq, etc. Because of the large size of my matrix, I want to extract this info automatically, not manually.

I know about SRAdb, but how exactly should I organize my searching? Technology not always presents in metadata. Regexp searching in NCBI abstract / titles / introduction?

Best wishes,

Maria

sra scrnaseq gsm metadata geo • 220 views
ADD COMMENTlink written 10 months ago by mariafirulevabio40
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