Question: alternative to mauve : multiple alignments of whole genomes
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gravatar for lagartija
9 months ago by
lagartija80
lagartija80 wrote:

Hi all,

I am trying to use mauve to compare the genome alignments I got from different softwares but I can't get it to work (every time I solve an error, a new one comes !). Do you know a way to compare all my alignments and view the common regions, rearrangements etc ?

An alternative to mauve is Trebol but it doesn't exist on linux. I can also try to make dotplots of 2 and 2 genomes but it is quite long to do.

Thank you very much for your help, Best, Sofia

alignment genome • 445 views
ADD COMMENTlink written 9 months ago by lagartija80
1

You could try Sibelia or Mugsy for whole-genome alignments and comparison.

ADD REPLYlink written 9 months ago by Sej Modha4.7k
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