hap.py roc curve plot

Question

[Nicolas Rosewick]

Hi,

I used hap.py to estimate some metrics of my VCF. Now I want to plot these metric in a ROC plot.

hap.py gives me these values : https://github.com/Illumina/hap.py/blob/master/doc/happy.md#roc-curves

For now I use this to generate my ROC

roc <- r %>% ggplot(aes(x=QUERY.FP,y=QUERY.TP))+geom_line()

Is is ok to use these values to plot the ROC ?

[WouterDeCoster]

Interesting, I am also doing that these days. I was using PRECISION and RECALL for my plots.